singlepp/singlepp_8hpp_source.html

#ifndef SINGLEPP_UMBRELLA_HPP

#define SINGLEPP_UMBRELLA_HPP


#include "Markers.hpp"

#include "Intersection.hpp"

#include "choose_classic_markers.hpp"

#include "train_single.hpp"

#include "train_integrated.hpp"

#include "classify_single.hpp"

#include "classify_integrated.hpp"


namespace singlepp {}


#endif

Intersection.hpp
Create an intersection of genes.

Markers.hpp
Define the Markers typedef.

choose_classic_markers.hpp
Classic method for choosing markers.

classify_integrated.hpp
Integrate classifications from multiple references.

classify_single.hpp
Classify cells in a test dataset based a single reference.

singlepp
Cell type classification using the SingleR algorithm in C++.
Definition classify_single.hpp:19

train_integrated.hpp
Prepare for integrated classification across references.

train_single.hpp
Train a classifier from a single reference.