classify_single.hpp File Reference

Classify cells in a test dataset based a single reference. More...

Go to the source code of this file.

Classes
struct	singlepp::ClassifySingleOptions< Float_ >
	Options for classify_single() and friends. More...
struct	singlepp::ClassifySingleBuffers< Label_, Float_ >
	Output buffers for classify_single(). More...
struct	singlepp::ClassifySingleResults< Label_, Float_ >
	Results of classify_single() and classify_single_intersect(). More...

Namespaces
namespace	singlepp
	Cell type classification using the SingleR algorithm in C++.

Functions
template<typename Value_ , typename Index_ , typename Float_ , typename Label_ >
void	singlepp::classify_single (const tatami::Matrix< Value_, Index_ > &test, const TrainedSingle< Index_, Float_ > &trained, const ClassifySingleBuffers< Label_, Float_ > &buffers, const ClassifySingleOptions< Float_ > &options)
	Implements the SingleR algorithm for automated annotation of single-cell RNA-seq data.
template<typename Value_ , typename Index_ , typename Float_ , typename Label_ >
void	singlepp::classify_single_intersect (const tatami::Matrix< Value_, Index_ > &test, const TrainedSingleIntersect< Index_, Float_ > &trained, const ClassifySingleBuffers< Label_, Float_ > &buffers, const ClassifySingleOptions< Float_ > &options)
template<typename Label_ = DefaultLabel, typename Value_ , typename Index_ , typename Float_ >
ClassifySingleResults< Label_, Float_ >	singlepp::classify_single (const tatami::Matrix< Value_, Index_ > &test, const TrainedSingle< Index_, Float_ > &trained, const ClassifySingleOptions< Float_ > &options)
template<typename Label_ = DefaultLabel, typename Value_ , typename Index_ , typename Float_ >
ClassifySingleResults< Label_, Float_ >	singlepp::classify_single_intersect (const tatami::Matrix< Value_, Index_ > &test, const TrainedSingleIntersect< Index_, Float_ > &trained, const ClassifySingleOptions< Float_ > &options)

Detailed Description

Classify cells in a test dataset based a single reference.