singlepp
A C++ library for cell type classification
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Prepare for integrated classification across references. More...
Go to the source code of this file.
Classes | |
struct | singlepp::TrainIntegratedInput< Value_, Index_, Label_ > |
Input to train_integrated() . More... | |
class | singlepp::TrainedIntegrated< Index_ > |
Classifier that integrates multiple reference datasets. More... | |
struct | singlepp::TrainIntegratedOptions |
Options for train_integrated() . More... | |
Namespaces | |
namespace | singlepp |
Cell type classification using the SingleR algorithm in C++. | |
Functions | |
template<typename Value_ , typename Index_ , typename Label_ , typename Float_ > | |
TrainIntegratedInput< Value_, Index_, Label_ > | singlepp::prepare_integrated_input (const tatami::Matrix< Value_, Index_ > &ref, const Label_ *labels, const TrainedSingle< Index_, Float_ > &trained) |
template<typename Index_ , typename Value_ , typename Label_ , typename Float_ > | |
TrainIntegratedInput< Value_, Index_, Label_ > | singlepp::prepare_integrated_input_intersect (Index_ test_nrow, const Intersection< Index_ > &intersection, const tatami::Matrix< Value_, Index_ > &ref, const Label_ *labels, const TrainedSingleIntersect< Index_, Float_ > &trained) |
template<typename Index_ , typename Id_ , typename Value_ , typename Label_ , typename Float_ > | |
TrainIntegratedInput< Value_, Index_, Label_ > | singlepp::prepare_integrated_input_intersect (Index_ test_nrow, const Id_ *test_id, const tatami::Matrix< Value_, Index_ > &ref, const Id_ *ref_id, const Label_ *labels, const TrainedSingleIntersect< Index_, Float_ > &trained) |
template<typename Value_ , typename Index_ , typename Label_ > | |
TrainedIntegrated< Index_ > | singlepp::train_integrated (const std::vector< TrainIntegratedInput< Value_, Index_, Label_ > > &inputs, const TrainIntegratedOptions &options) |
template<typename Value_ , typename Index_ , typename Label_ > | |
TrainedIntegrated< Index_ > | singlepp::train_integrated (std::vector< TrainIntegratedInput< Value_, Index_, Label_ > > &&inputs, const TrainIntegratedOptions &options) |
Prepare for integrated classification across references.