train_integrated.hpp File Reference

Prepare for integrated classification across references. More...

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Classes
struct	singlepp::TrainIntegratedInput< Value_, Index_, Label_ >
	Input to train_integrated(). More...
class	singlepp::TrainedIntegrated< Index_ >
	Classifier that integrates multiple reference datasets. More...
struct	singlepp::TrainIntegratedOptions
	Options for train_integrated(). More...

Namespaces
namespace	singlepp
	Cell type classification using the SingleR algorithm in C++.

Functions
template<typename Value_ , typename Index_ , typename Label_ , typename Float_ >
TrainIntegratedInput< Value_, Index_, Label_ >	singlepp::prepare_integrated_input (const tatami::Matrix< Value_, Index_ > &ref, const Label_ *labels, const TrainedSingle< Index_, Float_ > &trained)
template<typename Index_ , typename Value_ , typename Label_ , typename Float_ >
TrainIntegratedInput< Value_, Index_, Label_ >	singlepp::prepare_integrated_input_intersect (Index_ test_nrow, const Intersection< Index_ > &intersection, const tatami::Matrix< Value_, Index_ > &ref, const Label_ *labels, const TrainedSingleIntersect< Index_, Float_ > &trained)
template<typename Index_ , typename Id_ , typename Value_ , typename Label_ , typename Float_ >
TrainIntegratedInput< Value_, Index_, Label_ >	singlepp::prepare_integrated_input_intersect (Index_ test_nrow, const Id_ *test_id, const tatami::Matrix< Value_, Index_ > &ref, const Id_ *ref_id, const Label_ *labels, const TrainedSingleIntersect< Index_, Float_ > &trained)
template<typename Value_ , typename Index_ , typename Label_ >
TrainedIntegrated< Index_ >	singlepp::train_integrated (const std::vector< TrainIntegratedInput< Value_, Index_, Label_ > > &inputs, const TrainIntegratedOptions &options)
template<typename Value_ , typename Index_ , typename Label_ >
TrainedIntegrated< Index_ >	singlepp::train_integrated (std::vector< TrainIntegratedInput< Value_, Index_, Label_ > > &&inputs, const TrainIntegratedOptions &options)

Detailed Description

Prepare for integrated classification across references.