Options for choose_blocked(). More...

#include <blocked.hpp>

Public Attributes
std::optional< std::size_t >	number

bool	keep_ties = false

bool	use_minimum = false

int	num_threads = 1

Detailed Description

Options for choose_blocked().

Member Data Documentation

◆ keep_ties

bool singler_classic_markers::ChooseBlockedOptions::keep_ties = false

Whether to report ties at the number-th gene for each pairwise comparisons. If true, all genes with tied differences are reported in the output. Otherwise, no more than number genes will be reported, with ties broken by row index (i.e., earlier genes are preferentially retained).

◆ num_threads

int singler_classic_markers::ChooseBlockedOptions::num_threads = 1

Number of threads to use. The parallelization scheme is determined by tatami::parallelize().

◆ number

std::optional<std::size_t> singler_classic_markers::ChooseBlockedOptions::number

Number of top genes to use as the marker set in each pairwise comparison. If not set, this is automatically determined from the number of labels, see default_markers().

◆ use_minimum

bool singler_classic_markers::ChooseBlockedOptions::use_minimum = false

Whether to report the minimum difference across blocks. This focuses on genes that exhibit consistent differences in the same direction in every block. If false, the mean difference across blocks is reported instead, which is more lenient to variations in the per-block differences.

The documentation for this struct was generated from the following file: