rankings.hpp File Reference

Load ranking matrices for singlepp reference datasets. More...

#include "byteme/PerByte.hpp"
#include "byteme/RawFileReader.hpp"
#include "byteme/GzipFileReader.hpp"
#include "byteme/ZlibBufferReader.hpp"
#include "tatami/tatami.hpp"
#include "singlepp/singlepp.hpp"
#include <string>
#include <vector>
#include <cctype>
#include <type_traits>
#include <stdexcept>

Go to the source code of this file.

Classes
struct	singlepp_loaders::LoadRankingsOptions
	Options for loading rankings. More...

Namespaces
namespace	singlepp_loaders
	Load pre-processed single reference datasets.

Typedefs
template<typename Value_ = double, typename Index_ = int, typename Rank_ = int>
using	singlepp_loaders::RankMatrix = tatami::DenseMatrix< Value_, Index_, std::vector< Rank_ > >

Functions
template<typename Value_ = singlepp::DefaultValue, typename Index_ = singlepp::DefaultIndex>
RankMatrix< Value_, Index_ >	singlepp_loaders::load_rankings_from_text_file (const char *path, const LoadRankingsOptions &options)
template<typename Value_ = singlepp::DefaultValue, typename Index_ = singlepp::DefaultIndex>
RankMatrix< Value_, Index_ >	singlepp_loaders::load_rankings_from_gzip_file (const char *path, const LoadRankingsOptions &options)
template<typename Value_ = singlepp::DefaultValue, typename Index_ = singlepp::DefaultIndex>
RankMatrix< Value_, Index_ >	singlepp_loaders::load_rankings_from_zlib_buffer (const unsigned char *buffer, size_t len, const LoadRankingsOptions &options)

Detailed Description

Load ranking matrices for singlepp reference datasets.